If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ), 'gf_id' => 'HOM05D000958', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000958' ), 'data_identifier' => 'HOM05D000958', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000958', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '623', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p05090' => 'bna', 'A03p34640' => 'bna', 'A03p35830' => 'bna', 'A05p39350' => 'bna', 'A05p39360' => 'bna', 'A05p41710' => 'bna', 'A10p17770' => 'bna', 'A10p32610' => 'bna', 'A10p32760' => 'bna', 'Aa31LG11G10900' => 'aar', 'Aa31LG1G12560' => 'aar', 'Aa31LG1G21900' => 'aar', 'Aa31LG3G2200' => 'aar', 'Aa31LG3G2210' => 'aar', 'Aa31LG4G14550' => 'aar', 'Aa31LG5G16830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2419' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2868' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.280' => 'aag', 'Actinidia00060' => 'ach', 'Actinidia05257' => 'ach', 'Actinidia05258' => 'ach', 'Actinidia07133' => 'ach', 'Actinidia09257' => 'ach', 'Actinidia12521' => 'ach', 'Actinidia13089' => 'ach', 'Actinidia13090' => 'ach', 'Actinidia23414' => 'ach', 'Actinidia23415' => 'ach', 'Actinidia23417' => 'ach', 'Actinidia32380' => 'ach', 'Actinidia40031' => 'ach', 'Ah.01g002090' => 'amhyb', 'Ah.01g002100' => 'amhyb', 'Ah.01g002850' => 'amhyb', 'Ah.13g074410' => 'amhyb', 'Ah.15g092260' => 'amhyb', 'AL3G17260' => 'aly', 'AL3G20990' => 'aly', 'AL4G18600' => 'aly', 'AL6G12460' => 'aly', 'AL6G30100' => 'aly', 'AL8G37170' => 'aly', 'Aqoxy1G01624' => 'aox', 'Aqoxy2G03144' => 'aox', 'Aqoxy4G00008' => 'aox', 'Aqoxy5G03049' => 'aox', 'Aqoxy5G04135' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0990KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.418F0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.47SX7B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8GSN0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A59EXP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AC2PA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CHY07D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIL2CF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2953C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8QW84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZCM81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW12TT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPTU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NLJ7EF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA61TQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7C2PM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SN11VZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UIUY7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIK0YT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y28ALK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YDF97G' => 'arhy', 'AT3G06330' => 'ath', 'AT3G09760' => 'ath', 'AT5G03180' => 'ath', 'AT5G18760' => 'ath', 'AT5G60580' => 'ath', 'ATR0115G007' => 'atr', 'ATR1098G056' => 'atr', 'Atru.chr3.3637' => 'acertr', 'Atru.chr8.1877' => 'acertr', 'Atru.chr8.1878' => 'acertr', 'Atru.chr8.938_Atru.chr8.939' => 'acertr', 'AUR62015182' => 'cqu', 'AUR62017637' => 'cqu', 'AUR62024991' => 'cqu', 'AUR62029148' => 'cqu', 'AUR62039629' => 'cqu', 'AUR62040361' => 'cqu', 'AUR62040728' => 'cqu', 'AUR62043145' => 'cqu', 'BcaB03g11588' => 'bca', 'BcaB03g14670' => 'bca', 'BcaB03g14671' => 'bca', 'BcaB04g21328' => 'bca', 'BcaB05g21847' => 'bca', 'BcaB05g22655' => 'bca', 'BcaB08g36353' => 'bca', 'BcaC01g04245' => 'bca', 'BcaC02g09105' => 'bca', 'BcaC03g13022' => 'bca', 'BcaC03g13616' => 'bca', 'BcaC03g13958' => 'bca', 'BcaC04g19716' => 'bca', 'BcaC05g29480' => 'bca', 'BcaC05g29482' => 'bca', 'BcaC05g29698' => 'bca', 'BcaC05g29806' => 'bca', 'BcaC05g30038' => 'bca', 'BcaC06g32037' => 'bca', 'BcaC06g32039' => 'bca', 'BcaC09g47882' => 'bca', 'BcaC09g47884' => 'bca', 'BcaNung02126' => 'bca', 'BcaNung07066' => 'bca', 'BNapus_Darmor_BZH_scaffold_118p00210' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00020' => 'bna', 'BolC1t05630H' => 'bol', 'BolC2t06083H' => 'bol', 'BolC2t06914H' => 'bol', 'BolC2t07244H' => 'bol', 'BolC3t16490H' => 'bol', 'BolC3t16619H' => 'bol', 'BolC5t34488H' => 'bol', 'BolC5t34491H' => 'bol', 'BolC5t34748H' => 'bol', 'BolC9t58197H' => 'bol', 'BolC9t60077H' => 'bol', 'BolC9t60092H' => 'bol', 'BolC9t60093H' => 'bol', 'BraA02t04747Z' => 'bra', 'BraA02t05467Z' => 'bra', 'BraA02t05715Z' => 'bra', 'BraA03t12640Z' => 'bra', 'BraA03t12755Z' => 'bra', 'BraA05t22717Z' => 'bra', 'BraA05t22890Z' => 'bra', 'BraA10t43854Z' => 'bra', 'BraA10t45296Z' => 'bra', 'C02p00860' => 'bna', 'C02p10140' => 'bna', 'C02p11580' => 'bna', 'C03p42100' => 'bna', 'C03p43480' => 'bna', 'C04p00780' => 'bna', 'C05p58360' => 'bna', 'C05p58380' => 'bna', 'C05p60920' => 'bna', 'C09p53220' => 'bna', 'C09p73410' => 'bna', 'C09p73620' => 'bna', 'C09p73630' => 'bna', 'CAN.G171.8' => 'can', 'CAN.G185.5' => 'can', 'CAN.G631.21' => 'can', 'CAN.G888.11' => 'can', 'CAN.G946.4' => 'can', 'CANSAT25G1911' => 'cansat', 'CANSAT54G2392' => 'cansat', 'CANSAT64G0153' => 'cansat', 'CANSAT78G1229' => 'cansat', 'CARHR080850' => 'chi', 'CARHR084190' => 'chi', 'CARHR194230' => 'chi', 'CARHR210170' => 'chi', 'CARHR269110' => 'chi', 'CARHR274240' => 'chi', 'Carub.0003s0576' => 'cru', 'Carub.0003s0885' => 'cru', 'Carub.0006s0197' => 'cru', 'Carub.0006s1708' => 'cru', 'Carub.0008s2126' => 'cru', 'Ca_01418_v3' => 'car', 'Ca_05254_v3' => 'car', 'Ca_11463_v3' => 'car', 'Ca_13460_v3' => 'car', 'Ca_13653_v3' => 'car', 'Ca_16314_v3' => 'car', 'CBR_g10871' => 'cbr', 'Cc00_g08060' => 'ccan', 'Cc01_g11190' => 'ccan', 'Cc03_g02510' => 'ccan', 'Cc05_g00590' => 'ccan', 'Cc05_g00600' => 'ccan', 'Cc05_g02670' => 'ccan', 'Cc06_g03850' => 'ccan', 'CDE02G0604' => 'cde', 'CDE08G0303' => 'cde', 'Cfa011323' => 'cfa', 'Cfa015510' => 'cfa', 'Cfa017538' => 'cfa', 'Ciclev10004940m.g' => 'ccl', 'Ciclev10011411m.g' => 'ccl', 'Ciclev10011512m.g' => 'ccl', 'Ciclev10028219m.g' => 'ccl', 'CiPaw.01G154800' => 'cil', 'CiPaw.02G087600' => 'cil', 'CiPaw.09G177200' => 'cil', 'CiPaw.10G134400' => 'cil', 'CiPaw.13G112400' => 'cil', 'CiPaw.14G080200' => 'cil', 'ClCG02G021130' => 'cla', 'ClCG03G002200' => 'cla', 'ClCG06G005470' => 'cla', 'ClCG10G020370' => 'cla', 'ClCG11G016690' => 'cla', 'COL.COLO4_08390' => 'col', 'COL.COLO4_13951' => 'col', 'COL.COLO4_18341' => 'col', 'COL.COLO4_27039' => 'col', 'Cpa.g.sc16.96' => 'cpa', 'Cpa.g.sc216.15' => 'cpa', 'Cpa.g.sc226.3' => 'cpa', 'Cre02.g102600' => 'cre', 'CsaV3_1G012850' => 'csa', 'CsaV3_3G035730' => 'csa', 'CsaV3_4G032200' => 'csa', 'CsaV3_6G005650' => 'csa', 'CsaV3_6G013890' => 'csa', 'CSS0002017' => 'camsi', 'CSS0007627' => 'camsi', 'CSS0013358' => 'camsi', 'CSS0016467' => 'camsi', 'CSS0016810' => 'camsi', 'CSS0016962' => 'camsi', 'CSS0021745' => 'camsi', 'CSS0024836' => 'camsi', 'CSS0025297' => 'camsi', 'CSS0030041' => 'camsi', 'CSS0032144' => 'camsi', 'CSS0035868' => 'camsi', 'CSS0042402' => 'camsi', 'CSS0044085' => 'camsi', 'CSS0044105' => 'camsi', 'CSS0049362' => 'camsi', 'CSS0049615' => 'camsi', 'DCAR_009291' => 'dca', 'DCAR_009829' => 'dca', 'DCAR_017710' => 'dca', 'DCAR_018814' => 'dca', 'DCAR_022737' => 'dca', 'DCAR_027120' => 'dca', 'DCAR_030573' => 'dca', 'Dinv09490' => 'din', 'Dinv16833' => 'din', 'Dinv16834' => 'din', 'Dinv27209' => 'din', 'Dinv27211' => 'din', 'Dinv32754' => 'din', 'Dinv37278' => 'din', 'Dinv38336' => 'din', 'Dinv44439' => 'din', 'Duzib052G0059' => 'dzi', 'Duzib093G1740' => 'dzi', 'Duzib106G1336' => 'dzi', 'Duzib147G0463' => 'dzi', 'Duzib151G0103' => 'dzi', 'Duzib168G0625' => 'dzi', 'Duzib170G0641' => 'dzi', 'ECA233G5857' => 'eca', 'ECA238G3013' => 'eca', 'ECA238G3444' => 'eca', 'EL10Ac3g06573' => 'bvu', 'EL10Ac7g16539' => 'bvu', 'EL10Ac9g22506' => 'bvu', 'EL10Ac9g22889' => 'bvu', 'Eucgr.B02493' => 'egr', 'Eucgr.H03711' => 'egr', 'Eucgr.J00933' => 'egr', 'Eucgr.K01329' => 'egr', 'Eucgr.K03240' => 'egr', 'FAN02G0348' => 'fan', 'FAN02G1349' => 'fan', 'FAN05G0027' => 'fan', 'FAN05G2967' => 'fan', 'FAN07G2462' => 'fan', 'FAN07G2780' => 'fan', 'FAN09G1826' => 'fan', 'FAN09G4267' => 'fan', 'FAN11G1310' => 'fan', 'FAN12G0623' => 'fan', 'FAN12G3427' => 'fan', 'FAN14G0134' => 'fan', 'FAN14G3597' => 'fan', 'FAN14G4494' => 'fan', 'FAN16G0176' => 'fan', 'FAN17G0367' => 'fan', 'FAN21G1580' => 'fan', 'FAN22G1559' => 'fan', 'FAN25G1476' => 'fan', 'FvH4_3g32510' => 'fve', 'FvH4_4g17000' => 'fve', 'FvH4_6g15720' => 'fve', 'FvH4_6g40120' => 'fve', 'Glyma.02G310000' => 'gma', 'Glyma.03G180200' => 'gma', 'Glyma.10G051800' => 'gma', 'Glyma.11G147100' => 'gma', 'Glyma.12G068000' => 'gma', 'Glyma.12G173300' => 'gma', 'Glyma.13G005300' => 'gma', 'Glyma.13G139200' => 'gma', 'Glyma.13G213600' => 'gma', 'Glyma.13G326500' => 'gma', 'Glyma.14G002700' => 'gma', 'Glyma.15G099100' => 'gma', 'Glyma.19G180900' => 'gma', 'Glyma.20G064600' => 'gma', 'Gohir.A01G026200' => 'ghi', 'Gohir.A01G215600' => 'ghi', 'Gohir.A03G034300' => 'ghi', 'Gohir.A05G102400' => 'ghi', 'Gohir.A08G197300' => 'ghi', 'Gohir.A09G007600' => 'ghi', 'Gohir.A10G102101' => 'ghi', 'Gohir.D01G023427' => 'ghi', 'Gohir.D01G204400' => 'ghi', 'Gohir.D03G134000' => 'ghi', 'Gohir.D05G102100' => 'ghi', 'Gohir.D08G214500' => 'ghi', 'Gohir.D09G007000' => 'ghi', 'Gohir.D10G165500' => 'ghi', 'Gorai.002G026800' => 'gra', 'Gorai.002G248600' => 'gra', 'Gorai.003G141100' => 'gra', 'Gorai.004G228500' => 'gra', 'Gorai.006G008500' => 'gra', 'Gorai.009G106300' => 'gra', 'Gorai.011G184700' => 'gra', 'GSVIVG01017826001' => 'vvi', 'GSVIVG01020801001' => 'vvi', 'GSVIVG01025179001' => 'vvi', 'GSVIVG01025673001' => 'vvi', 'HanXRQChr01g0016851' => 'han', 'HanXRQChr02g0038341' => 'han', 'HanXRQChr02g0055771' => 'han', 'HanXRQChr06g0173461' => 'han', 'HanXRQChr07g0195591' => 'han', 'HanXRQChr11g0345331' => 'han', 'HanXRQChr13g0403501' => 'han', 'HanXRQChr14g0452891' => 'han', 'HanXRQChr14g0452901' => 'han', 'HanXRQChr14g0454201' => 'han', 'HanXRQChr17g0537201' => 'han', 'Haze_01040' => 'cav', 'Haze_20610' => 'cav', 'Haze_23840' => 'cav', 'Hma1.2p1_0205F.1_g087540' => 'hma', 'Hma1.2p1_0643F.1_g194730' => 'hma', 'Hma1.2p1_0823F.1_g224540' => 'hma', 'Hma1.2p1_1031F.1_g250000' => 'hma', 'HPP92_002161' => 'vpl', 'HPP92_002162' => 'vpl', 'HPP92_013289' => 'vpl', 'HPP92_013290' => 'vpl', 'HPP92_013294' => 'vpl', 'HPP92_016564' => 'vpl', 'Hund08140' => 'sun', 'Hund20215' => 'sun', 'Hund24324' => 'sun', 'Hund24903' => 'sun', 'Lalb_Chr01g0013641' => 'lal', 'Lalb_Chr01g0018891' => 'lal', 'Lalb_Chr03g0027301' => 'lal', 'Lalb_Chr04g0246991' => 'lal', 'Lalb_Chr13g0293871' => 'lal', 'Lalb_Chr18g0055811' => 'lal', 'Lalb_Chr19g0137321' => 'lal', 'Lalb_Chr20g0112751' => 'lal', 'Lalb_Chr24g0394591' => 'lal', 'Lalb_Chr24g0394601' => 'lal', 'Lj1C191G1' => 'lonja', 'Lj2A111T61' => 'lonja', 'Lj2C1029T9' => 'lonja', 'Lj3A1010T57' => 'lonja', 'Lj3A1010T58' => 'lonja', 'Lj3C811G1' => 'lonja', 'Lj3g0010603' => 'lja', 'Lj3g0023136' => 'lja', 'Lj5g0023219' => 'lja', 'Lj6A667T29' => 'lonja', 'Lj6g0015579' => 'lja', 'Lj6g0021547' => 'lja', 'LjContig00081g0005402' => 'lja', 'Lsat_1_v5_gn_1_65381' => 'lsa', 'Lsat_1_v5_gn_2_108761' => 'lsa', 'Lsat_1_v5_gn_2_98320' => 'lsa', 'Lsat_1_v5_gn_3_23520' => 'lsa', 'Lsat_1_v5_gn_6_46001' => 'lsa', 'Manes.03G190100' => 'mes', 'Manes.04G021800' => 'mes', 'Manes.08G006100' => 'mes', 'Manes.11G144500' => 'mes', 'Manes.15G018100' => 'mes', 'MBI02_g25366_MAGBIO' => 'mbi', 'MBI10_g06417_MAGBIO' => 'mbi', 'MCO02G286' => 'mco', 'MD03G1116800' => 'mdo', 'MD04G1099800' => 'mdo', 'MD08G1119900' => 'mdo', 'MD09G1135100' => 'mdo', 'MD11G1134800' => 'mdo', 'MD12G1119900' => 'mdo', 'MD13G1175100' => 'mdo', 'MD16G1176800' => 'mdo', 'MD17G1124100' => 'mdo', 'Medtr1g064710' => 'mtr', 'Medtr2g020520' => 'mtr', 'Medtr2g094130' => 'mtr', 'Medtr3g081490' => 'mtr', 'Medtr4g059540' => 'mtr', 'Medtr4g459440' => 'mtr', 'Medtr7g075700' => 'mtr', 'Medtr7g075740' => 'mtr', 'MELO3C005058.2' => 'cme', 'MELO3C009333.2' => 'cme', 'MELO3C021371.2' => 'cme', 'MELO3C025770.2' => 'cme', 'MELO3C026392.2' => 'cme', 'Migut.D02218' => 'egut', 'Migut.G00222' => 'egut', 'Migut.G00733' => 'egut', 'Migut.J00554' => 'egut', 'Migut.M00326' => 'egut', 'Migut.N02836' => 'egut', 'Migut.O00443' => 'egut', 'MSTRG.10045' => 'ama', 'MSTRG.17808' => 'ama', 'MSTRG.18040' => 'ama', 'MSTRG.18656' => 'ama', 'MSTRG.21128' => 'ama', 'MSTRG.24422' => 'ama', 'MSTRG.3443' => 'ama', 'MSTRG.3960' => 'ama', 'MSTRG.9807' => 'ama', 'Nitab4.5_0000101g0050' => 'nta', 'Nitab4.5_0000181g0080' => 'nta', 'Nitab4.5_0000650g0200' => 'nta', 'Nitab4.5_0001149g0060' => 'nta', 'Nitab4.5_0001624g0030' => 'nta', 'Nitab4.5_0001843g0160' => 'nta', 'Nitab4.5_0003701g0020' => 'nta', 'Nitab4.5_0005150g0030' => 'nta', 'Nitab4.5_0006501g0030' => 'nta', 'Nitab4.5_0006724g0030' => 'nta', 'Nitab4.5_0011503g0010' => 'nta', 'Nn2g10778' => 'nnu', 'Nn3g20222' => 'nnu', 'Nn3g21258' => 'nnu', 'Oeu001265.1' => 'oeu', 'Oeu014958.2' => 'oeu', 'Oeu030178.1' => 'oeu', 'Oeu035832.1' => 'oeu', 'Oeu035833.1' => 'oeu', 'Oeu038158.1' => 'oeu', 'Oeu044799.3' => 'oeu', 'Os02g0165000' => 'osa', 'Os04g0105100' => 'osa', 'Os06g0340200' => 'osa', 'Os06g0677300' => 'osa', 'Peaxi162Scf00182g00112' => 'pax', 'Peaxi162Scf00270g00822' => 'pax', 'Peaxi162Scf00351g00613' => 'pax', 'Peaxi162Scf01067g00023' => 'pax', 'PGR004G0309' => 'pgr', 'PGR004G1512' => 'pgr', 'PGR119G0979' => 'pgr', 'PGR142G2882' => 'pgr', 'PGSC0003DMG400001776' => 'stu', 'PGSC0003DMG400008105' => 'stu', 'PGSC0003DMG400022853' => 'stu', 'PGSC0003DMG400029165' => 'stu', 'PGSC0003DMG401000938' => 'stu', 'PGSC0003DMG402000938' => 'stu', 'Phvul.005G135900' => 'pvu', 'Phvul.006G002500' => 'pvu', 'Phvul.006G160100' => 'pvu', 'Phvul.007G221300' => 'pvu', 'Phvul.008G290800' => 'pvu', 'Phvul.011G078700' => 'pvu', 'Potri.006G024000' => 'ptr', 'Potri.006G129000' => 'ptr', 'Potri.008G196400' => 'ptr', 'Potri.009G013300' => 'ptr', 'Potri.010G014800' => 'ptr', 'Potri.010G014950' => 'ptr', 'Potri.016G022900' => 'ptr', 'Pp3c18_12020' => 'ppa', 'Pp3c21_17420' => 'ppa', 'Pp3c9_8350' => 'ppa', 'Prupe.1G143600' => 'ppe', 'Prupe.3G191600' => 'ppe', 'Prupe.6G100700' => 'ppe', 'Prupe.6G238100' => 'ppe', 'Psat1g186640' => 'psa', 'Psat5g106760' => 'psa', 'Psat5g278200' => 'psa', 'Psat6g070760' => 'psa', 'Psat7g224800' => 'psa', 'PSO063G0287' => 'pso', 'PSO170G3317' => 'pso', 'PSO302G0132' => 'pso', 'PSO339G4144' => 'pso', 'PSO339G5119' => 'pso', 'PSO384G0883' => 'pso', 'PSO675G5771' => 'pso', 'PSO675G5915' => 'pso', 'QL01p022338' => 'qlo', 'QL06p006964' => 'qlo', 'QL07p044656' => 'qlo', 'RcHm_v2.0_Chr2g0154751' => 'rch', 'RcHm_v2.0_Chr3g0469421' => 'rch', 'RcHm_v2.0_Chr4g0420671' => 'rch', 'RcHm_v2.0_Chr5g0059571' => 'rch', 'Rhsim02G0014400' => 'rsi', 'Rhsim04G0147800' => 'rsi', 'Rhsim05G0182200' => 'rsi', 'Rhsim12G0013900' => 'rsi', 'Rhsim13G0094000' => 'rsi', 'Rhsim13G0123800' => 'rsi', 'Sabra06G0017500' => 'sbr', 'Sabra06G0101500' => 'sbr', 'Sabra08G0149400' => 'sbr', 'Sabra09G0008200' => 'sbr', 'Sabra10G0010000' => 'sbr', 'Sabra16G0023100' => 'sbr', 'Sabra16G0023200' => 'sbr', 'Sabra16G0029100' => 'sbr', 'SalBow2G2833' => 'sbo', 'SalBow2G3085' => 'sbo', 'SalBow3G2354' => 'sbo', 'SalBow3G2824' => 'sbo', 'SalBow3G4423' => 'sbo', 'Sc06g0010090' => 'sci', 'Sc07g0004780' => 'sci', 'Sc07g0004790' => 'sci', 'Sc13g0003700' => 'sci', 'Sc19g0004840' => 'sci', 'Sc19g0004860' => 'sci', 'Sed0011267' => 'sed', 'Sed0011701' => 'sed', 'Sed0013815' => 'sed', 'Sed0014178' => 'sed', 'Sed0015507' => 'sed', 'Sed0022909' => 'sed', 'SEGI_27912' => 'sgi', 'SEGI_28057' => 'sgi', 'SEGI_31500' => 'sgi', 'SEGI_34812' => 'sgi', 'SEGI_38113' => 'sgi', 'SGA_v2.0_scaffold126G33923' => 'sas', 'SGA_v2.0_scaffold241G44208' => 'sas', 'SGA_v2.0_scaffold57G20264' => 'sas', 'SGA_v2.0_scaffold75G24868' => 'sas', 'SGA_v2.0_scaffold97G29225' => 'sas', 'SHI12527' => 'shi', 'SMO132G0002' => 'smo', 'SMO358G0286' => 'smo', 'SMO358G0327' => 'smo', 'SMO358G0355' => 'smo', 'SMO358G0368' => 'smo', 'Solyc01g067800.3' => 'sly', 'Solyc06g016770.3' => 'sly', 'Solyc07g044780.3' => 'sly', 'Solyc09g007680.4' => 'sly', 'Solyc11g069350.2' => 'sly', 'Sopen01g029760' => 'spe', 'Sopen06g005790' => 'spe', 'Sopen07g023360' => 'spe', 'Sopen09g002570' => 'spe', 'Sopen11g028070' => 'spe', 'Sp3g05240' => 'spa', 'Sp3g08100' => 'spa', 'Sp6g22150' => 'spa', 'Sp6g25620' => 'spa', 'Sp6g39540' => 'spa', 'TAR623G1263' => 'tar', 'TAR627G0312' => 'tar', 'TAR633G0812' => 'tar', 'TAR633G2057' => 'tar', 'TAR633G2525' => 'tar', 'THA.LOC104802730' => 'tha', 'THA.LOC104810853' => 'tha', 'THA.LOC104826973' => 'tha', 'THA.LOC104827122' => 'tha', 'Thecc.01G164200' => 'tca', 'Thecc.04G275400' => 'tca', 'Thecc.05G057800' => 'tca', 'Thecc.09G339800' => 'tca', 'Thhalv10013381m.g' => 'esa', 'Thhalv10013453m.g' => 'esa', 'Thhalv10013823m.g' => 'esa', 'Thhalv10020625m.g' => 'esa', 'Thhalv10020737m.g' => 'esa', 'TPR.G11575' => 'tpr', 'TPR.G1477' => 'tpr', 'TPR.G15530' => 'tpr', 'TPR.G40517' => 'tpr', 'TPR.G6569' => 'tpr', 'TPR.G8258' => 'tpr', 'TWI31G0053' => 'twi', 'TWI32G0766' => 'twi', 'TWI53G1847' => 'twi', 'TWI73G0724' => 'twi', 'TWI74G1408' => 'twi', 'TWI79G1047' => 'twi', 'unitig_746.g26638' => 'ugi', 'unitig_748.g8365' => 'ugi', 'unitig_749.g14270' => 'ugi', 'unitig_8.g4104' => 'ugi', 'unitig_8.g4944' => 'ugi', 'vmacro03195' => 'vma', 'vmacro08720' => 'vma', 'vmacro08747' => 'vma', 'vmacro15273' => 'vma', 'vmacro20034' => 'vma', 'VMungo0540G0404' => 'vmu', 'VMungo0540G1005' => 'vmu', 'VMungo0647G1834' => 'vmu', 'VMungo0720G0411' => 'vmu', 'VMungo1080G1600' => 'vmu', 'VMungo1127G2174' => 'vmu', 'Zm00001eb224730' => 'zma', 'Zm00001eb244390' => 'zma', 'Zm00001eb418870' => 'zma' ) $gf_id = 'HOM05D000958' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000958' ) $data_identifier = 'HOM05D000958' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 7, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 2, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 11, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 5, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 11, 'nnu' => (int) 3, 'oeu' => (int) 7, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418870' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1